Predoctoral Training Program in Bioinformatics and Computational Biology

生物信息学和计算生物学博士前培训项目

• 批准号: 10090190
• 负责人: Timothy C Elston
• 金额: $ 24.38万
• 依托单位: UNIV OF NORTH CAROLINA CHAPEL HILL
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-07-01 至 2026-06-30
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10090190
• 关键词: Bioinformatics; Computational Biology; Training Programs; pre-doctoral

Computational approaches based on statistical, mathematical and machine-learning principles are now permeating all areas of biological and biomedical research. Driving this explosion in biological computation are new high-throughput techniques in genomics, proteomics, metabolomics and chemoinformatics, and advances in modern imaging. Each of these fields generates complex data sets that require computational approaches to analyze and interpret. Also driving the use of computing in biomedical research is the increasing availability of high-performance computing, including graphical processing units (GPUs), that make deep learning and other artificial intelligence approaches computationally feasible. As a result, there is an increasing demand for biomedical researchers with expertise in scientific computing and data analytics and trained in statistical and mathematical modeling. To address this need, in 2007 the University of North Carolina at Chapel Hill established the Ph.D. Curriculum in Bioinformatics and Computational Biology (BCB). The mission of the BCB curriculum is to train the next generation of scientists with the computational and quantitative skills required to make important contributions to modern biological and biomedical research. To accomplish this goal, not only requires students receive training in computational, mathematical and statistical approaches, but also that they become sufficiently versed in biology and acquire skills required for multidisciplinary team science. The BCB curriculum also strives to provide students with the professional skills required to successfully transition into careers in the biomedical workforce. The specific objects of the BCB curriculum are to: 1) provide broad knowledge of bioinformatics and computational biology approaches and the computational, statistical and mathematical foundations on which they are built, 2) provide in depth training in a chosen area of bioinformatics and computational biology, 3) train students to participate in collaborative and interdisciplinary research, 4) train students to develop independent research programs and identify new research directions, 5) develop skills in oral and written communication, 6) provide students with professional training opportunities for careers outside of academics and 7) provide students with training in the Responsible Conduct of Research, and in Rigor and Reproducibility. The proposed T32 training program will support 6 BCB students during their second year of graduate training. In addition to providing didactic training and scientific research opportunities, the BCB curriculum provides professional training opportunities by sponsoring events such as “lunch and learn” sessions with representatives from the pharmaceutical and biotechnology sectors and “hackathons” with the National Center for Biotechnology Information. The University of North Carolina and BCB curriculum are committed to providing a supportive environment for students from all backgrounds and providing them with the training needed to successfully transitions to biomedical research careers in academic, governmental and corporate settings.

基于统计、数学和机器学习原理的计算方法现在已经成为 渗透到生物学和生物医学研究的各个领域。推动生物计算爆炸的是 基因组学、蛋白质组学、代谢组学和化学信息学的高通量新技术及其进展 在现代成像中。这些领域中的每一个都产生复杂的数据集，这些数据集需要计算方法来 分析和解释。在生物医学研究中使用计算的另一个驱动因素是， 高性能计算，包括图形处理单元（GPU），使深度学习和其他 人工智能在计算上是可行的。因此，对以下方面的需求日益增加： 生物医学研究人员，具有科学计算和数据分析方面的专业知识， 数学建模为了满足这一需求，2007年，位于查佩尔山的北卡罗来纳州大学建立了 的博士生物信息学和计算生物学课程（BCB）。 BCB课程的使命是培养下一代科学家， 为现代生物学和生物医学研究做出重要贡献所需的定量技能。到 实现这一目标，不仅要求学生接受计算、数学和统计方面的训练， 他们不仅要精通生物学，而且要掌握生物学所需的技能， 多学科团队科学BCB课程还致力于为学生提供专业技能， 需要成功地过渡到生物医学劳动力的职业生涯。《巴塞尔公约》的具体目标 课程是：1）提供生物信息学和计算生物学方法的广泛知识， 计算，统计和数学基础上，他们是建立，2）提供深入的培训， 选择生物信息学和计算生物学领域，3）培养学生参与协作和 跨学科研究，4）培养学生开发独立的研究计划，并确定新的研究 方向，5）发展口头和书面交流技能，6）为学生提供专业培训 为学术以外的职业提供机会，7）为学生提供负责任行为的培训 研究，并在严谨和繁殖。 拟议的T32培训计划将在研究生第二年支持6名BCB学生 训练除了提供教学培训和科学研究的机会，BCB课程 通过赞助“午餐和学习”等活动，提供专业培训机会， 来自制药和生物技术部门的代表以及与国家中心的“黑客马拉松” 生物技术信息。北卡罗来纳州和BCB课程的大学致力于提供 为各种背景的学生提供支持性环境，并为他们提供所需的培训， 成功过渡到学术，政府和企业环境中的生物医学研究事业。