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Bacterial cell killing by topoisomerase I mediated DNA lesion

拓扑异构酶 I 介导的 DNA 损伤杀死细菌细胞

基本信息

批准号：
7756650
负责人：
Yuk-Ching Tse-Dinh
金额：
$ 36.78万
依托单位：
NEW YORK MEDICAL COLLEGE
依托单位国家：
美国
项目类别：
财政年份：
2006
资助国家：
美国
起止时间：
2006-02-01 至 2011-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7756650
关键词：
Anti-Bacterial Agents Antibiotics Bacteria Bacterial DNA Topoisomerase I Bacterial Typing Biological Assay Cells Cleaved cell Collaborations Complex DNA DNA Fingerprinting DNA Topoisomerases DNA biosynthesis DNA lesion Development Emerging Communicable Diseases Enzymes Escherichia coli Face Future General Population Genes Genetic Recombination Genetic Transcription Genomic Library Goals Gram-Negative Bacteria Growth Hospitals In Vitro Infection Laboratories Lead Lesion Libraries Malignant Neoplasms Measurement Mediating Modeling Monitor Mutagenesis Mutation Pathway interactions Plasmids Predisposition Prevention Protein Biosynthesis Proteins Public Health Pulsed-Field Gel Electrophoresis Recombinants Research Research Personnel Resistance Role Screening procedure Therapeutic Agents Topoisomerase Type I DNA Topoisomerases Yersinia pestis bactericide biodefense cell killing cellular targeting community setting follow-up genetic strain killings medical schools mutant novel pathogen pathogenic bacteria programs recombinational repair response small molecule

项目摘要

DMA topoisomerases are ubiquitous enzymes involved in DNA replication, transcription and recombination. It is well known that trapping of covalent complexes formed between cleaved DNA and type II or type IB DNA topoisomerases by therapeutic agents leads to the killing of cancer or bacterial cells. The class of type IA DNA topoisomerases is a promising target for novel therapetuic agents, but molecules targeting type IA DNA topoisomerases have not been discovered. We have identified a mutant of Yersinia pestis topoisomerase I that can result in extensive killing when expressed in E. coli cells due to the stabilization of the covalent complex with cleaved DNA. This is the first demonstration of bacterial cell killing from accumlated covalent complex formed by a type IA DNA topoisomerase. The specific aims of the project are: 1. A high-through-put assay will be utilized at the NSRB facility at Harvard Medical School to screen the 150,000 compounds available for small molecules that will result in accumulation of covalent complex formed by recombinant Yersinia pestis topoisomerase I. Hits will be characterized by in vitro topoisomerase assay and bacterial cell killing and further developed in collaboration with medicinal chemists at NSRB. 2. To investigate the mechanism of bacterial cell killing by stabilized type IA DNA topoisomerase covalent complex, E. coli expressing the mutant Y. pestis topoisomerase I that forms the stablized covalent complex will be studied. Sensitivity to topoisomerase I induced DNAlesion will be compared under different growth conditions to determine the role of DNA replication and protein synthesis in the cell killing mechanism. 3. To identify other factors influencing the suscepbility of bacteria to killing by trapped type IAtopoisomerase cleaved complex, E. coli strains with mutations in recombination and repair pathways will be studied. An E. coli genomic library in a multi-copy plasmid will be used to identify proteins that when expressed in a higher level, can confer resistance to topoisomerase I mediated cell killing. Transposon mutagenesis will be carried out to screen for mutants with increased sensitivity or resistance to the cell killing. The emergence of pathogenic bacteria resistant to all common antibiotics represent a critical challenge in public health. Future terrorist attacks employing bacterial pathogens could involve agents resistant to current antibiotics. This research has the potential to lead to the discovery of a novel class of antibiotics.

DMA拓扑异构酶是一种普遍存在的参与DNA复制、转录和重组的酶。