"Gene Trafficking on an Evolving X Chromosome in Drosophila"

“果蝇进化 X 染色体上的基因贩运”

• 批准号: 7866777
• 负责人: Doris Bachtrog
• 金额: $ 29.51万
• 依托单位: UNIVERSITY OF CALIFORNIA BERKELEY
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-03-01 至 2014-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7866777
• 关键词: Alternative Splicing; Base Sequence; Computer Analysis; Data; Defect; Dosage Compensation (Genetics); Drosophila genus; Evolution; Fertility; Gene Duplication; Gene Expression; Gene Expression Profile; Genes; Genetic; Genetic Polymorphism; Genome; Genomics; Head; Human; Larva; Location; Male Infertility; Modeling; Molecular; Molecular Profiling; Movement; Ovary; Pattern; Population; Population Genetics; Property; Relative (related person); Sex Bias; Sex Chromosomes; System; Testing; Testis; Tissues; X Chromosome; X Inactivation; Y Chromosome; autosome; comparative; driving force; duplicate genes; fly; functional genomics; genome sequencing; genome-wide; improved; male; novel; pressure; public health relevance; response; sample fixation; sex; trafficking; transcriptomics

DESCRIPTION (provided by applicant): Genes are distributed non-randomly across the genome. One intriguing pattern to emerge from genome-wide expression profiling is that genes with sex-biased expression that is, genes that are differentially expressed between the sexes show a biased distribution on sex chromosomes. In particular, male-biased genes are depleted from the Drosophila X chromosome, such that the X has become demasculinized. The deficiency of male-biased genes can partly be explained by movement of male genes off the X chromosome. The evolutionary forces underlying these patterns are controversial and may involve male germline X inactivation, sexual antagonism, or dosage compensation mechanisms. Drosophila miranda - a species for which we recently generated a de novo genome sequence assembly - has a newly formed sex chromosome system. Its neo-Y chromosome is in transition from an ordinary autosome to a degenerate Y. In response, the neo-X is evolving the stereotypical properties of a differentiated X, including the acquisition of partial dosage compensation and - as suggested by preliminary data - an excess of gene translocations originating from its neo-X. D. Miranda therefore provides a unique system to study the mechanisms of gene trafficking on an evolving X chromosome and its evolutionary causes in action using a comparative and functional genomics approach. PUBLIC HEALTH RELEVANCE: Evidence for the importance of genetic factors in male fertility is accumulating, and is often associated with genes that are expressed in testis. Comparative genome analysis has shown that testis genes show rapid turnover between species (that is, many novel genes unique to humans show testis-specific expression) and often avoiding linkage to sex chromosomes. We will use the model species Drosophila to investigate the underlying causes for the rapid evolution of testis genes and their biased distribution in the genome, which will help to understand male infertility associated with defects in testis genes.

描述(申请人提供)：基因在基因组中非随机分布。从全基因组表达谱中出现的一个有趣的模式是，具有性别偏见表达的基因，即性别之间差异表达的基因，在性染色体上显示出偏见的分布。具体地说，果蝇X染色体上的男性偏向基因被耗尽，导致X染色体去维管化。男性偏向基因的缺失可以部分解释为男性基因从X染色体上移开。这些模式背后的进化力量是有争议的，可能涉及雄性生殖系X失活、性对抗或剂量补偿机制。我们最近为一个物种米兰达果蝇生成了从头开始的基因组序列组合，它有一个新形成的性染色体系统。它的neo-Y染色体正在从普通的常染色体向退化的Y过渡。作为回应，neo-X正在进化分化X的刻板印象，包括获得部分剂量补偿，以及--正如初步数据所表明的--来自其neo-X的过量基因易位。因此，D.米兰达提供了一种独特的系统，利用比较基因组学和功能基因组学方法研究进化中的X染色体上的基因转移机制及其进化原因。 公共卫生相关性：关于遗传因素在男性生育中的重要性的证据正在积累，而且往往与睾丸中表达的基因有关。比较基因组分析表明，睾丸基因在物种之间表现出快速的更替(即许多人类特有的新基因表现出睾丸特有的表达)，并经常避免与性染色体连锁。我们将利用模式物种果蝇来研究睾丸基因快速进化的潜在原因及其在基因组中的偏向分布，这将有助于理解与睾丸基因缺陷相关的男性不育。