KU Bioinformatics Computing Facility Core Renovation and Improvement

KU生物信息学计算设施核心改造和改进

• 批准号: 7936024
• 负责人: STEVEN F. WARREN
• 金额: $ 465.79万
• 依托单位: UNIVERSITY OF KANSAS LAWRENCE
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-04-29 至 2012-12-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7936024
• 关键词: Address; Bioinformatics; Biological; Biomedical Computing; Biomedical Research; Centers of Research Excellence; Chemicals; Chemistry; Communities; Core Facility; Data; Data Storage and Retrieval; Development; Floods; Floor; Funding; Future; Grant; High Performance Computing; Kansas; Laboratories; Libraries; Life; Mass Spectrum Analysis; Medical center; Methodology; Microscopy; Modeling; Molecular; National Center for Research Resources; National Institute of General Medical Sciences; Process; Research Personnel; Research Project Grants; Resources; Rest; Science; Services; System; Time; United States National Institutes of Health; Universities; X-Ray Crystallography; base; computing resources; density; design; experience; high throughput screening; improved; instrument; instrumentation; meetings; multidisciplinary; simulation; square foot

DESCRIPTION (provided by applicant): The University of Kansas Lawrence campus requests funding to renovate and expand 3646 gross square feet (gsf) in Nichols Hall designated as the Bioinformatics Computing Facility core (BCF). The renovated space will support computationally intensive multidisciplinary and integrative research projects in the biological and biomedical sciences across many departments of the University and at the KU Medical Center. The BCF supports four dozen NIH projects, two NCRR COBRE grants, a NIGMS Chemical Methodologies and Library Development (CMLD) project, a MLI Specialized Chemistry Center, and ten core service laboratories. These laboratories provide analytical instrumentation and technical services such as molecular interrogation, high throughput screening, microscopy, and biomolecular sequencing to the University's biological and biomedical sciences researchers. The proposed computational commons will be a sustainable, energy efficient data center for hosting existing and future assets dedicated to biological and biomedical computing. Computing is becoming an indispensible component in the biological and biomedical research. Biomedical related computation is driven by three factors: huge and growing amounts of data from instruments such as biomolecular sequencers, mass spectrometry, X-ray crystallography and high throughput screening systems; simulation aimed at understanding the fundamental processes of life at many scales through the development and integration of models of ever greater complexity; and a flood of new questions arising from the availability of data from instruments whose answers depend on modeling and computation. This precisely mirrors our experiences, we have seen a large increase in the number of biological and biomedical science projects that require high performance computing and large scale storage of data. These factors, along with a rapidly expanding computing and storage hardware base that has outgrown the existing facility makes meeting current and future demands of an active biomedical computing community difficult, if not impossible. The proposed renovation will provide the capacity needed to host the computing and storage resources capable of addressing these new challenges in biomedical research through an expanded computing commons. The project will renovate 3646 gsf, including 1232 gsf on the first floor of Nichols Hall as the primary machine room for the existing BCF and additional 2414 gsf as support space. This renovated space, along with additional power, cooling and network bandwidth, will support a high-density computing capacity twenty times greater than what is currently available to BCF users in a highly sustainable and energy efficient design. The proposed renovations will also improve network connectivity between this facility and the rest of the campus, increasing the accessibility of computational resources within and outside the university.

描述（由申请人提供）：堪萨斯劳伦斯校区的大学要求资金，以翻新和扩大3646总平方英尺（gsf）在尼科尔斯大厅指定为生物信息学计算设施的核心（BCF）。翻新后的空间将支持计算密集型的多学科和综合研究项目，在生物和生物医学科学在大学的许多部门和KU医疗中心。BCF支持40多个NIH项目，两个NCRR COBRE赠款，一个NIGMS化学方法和图书馆开发（CMLD）项目，一个MLI专业化学中心和10个核心服务实验室。这些实验室为大学的生物和生物医学科学研究人员提供分析仪器和技术服务，如分子询问，高通量筛选，显微镜和生物分子测序。拟议中的计算公共空间将是一个可持续的、节能的数据中心，用于托管现有和未来的生物和生物医学计算资产。计算正成为生物和生物医学研究中不可缺少的组成部分。生物医学相关的计算由三个因素驱动：来自生物分子测序仪，质谱仪，X射线晶体学和高通量筛选系统等仪器的巨大且不断增长的数据量;旨在通过开发和集成越来越复杂的模型来理解许多尺度上生命的基本过程的模拟;以及大量的新问题，这些问题的答案取决于模型和计算。这恰恰反映了我们的经验，我们已经看到需要高性能计算和大规模数据存储的生物和生物医学科学项目的数量大幅增加。这些因素，沿着已经超出现有设施的快速扩展的计算和存储硬件基础，使得满足活跃的生物医学计算社区的当前和未来需求变得困难，如果不是不可能的话。拟议的翻修将提供所需的能力，以托管能够通过扩大计算共享来应对生物医学研究中这些新挑战的计算和存储资源。该项目将改造3646平方英尺，包括尼科尔斯大厅一楼的1232平方英尺作为现有BCF的主机房，以及额外的2414平方英尺作为支持空间。这一翻新的空间，沿着额外的电力、冷却和网络带宽，将以高度可持续和节能的设计支持比BCF用户目前可用的高20倍的高密度计算能力。拟议的翻修还将改善该设施与校园其他部分之间的网络连接，增加大学内外计算资源的可访问性。