CAREER: Imaging dynamic macromolecules in solution with x-ray lasers
CAREER: Imaging dynamic macromolecules in solution with x-ray lasers
批准号:
1943448
负责人:
Richard Kirian
金额:
$107.29万
依托单位:
依托单位国家:
美国
项目类别:
Continuing Grant
财政年份:
2020
资助国家:
美国
项目状态:
未结题
起止时间:
2020-02-15 至 2025-01-31
中文摘要
亚利桑那州立大学(ASU)因开发新的生物分子成像技术而获奖,该技术利用了超亮X射线源的独特能力。这项研究旨在实现广泛适用的方法来可视化蛋白质和其他生物分子在生理温度下在溶液中的动态运动。该教育计划将本科生和博士生纳入具体的研究项目,以及在亚利桑那州立大学发展超快X射线科学的更广泛的倡议。为亚利桑那州立大学的本科生第一代社区学院转学学生提供了在亚利桑那州立大学从事有指导的独立研究的机会。一个由本科生和博士生组成的团队将共同努力,实现互补的研究目标,并将前往大型实验室设施,如SLAC国家实验室的直线加速器相干光源,以了解不同的科学家团队如何合作。将通过在合作机构的交叉培训机会、参加国际会议、协助个人发展计划和其他形式的指导来支持学生的职业发展。将开发一个新的免费开放源码软件套件,作为一种教学工具,帮助更多的学生掌握X射线数据分析方法和探索新的成像概念。将开发一种互补的光学衍射成像实验室设备来教授实验技术。这些硬件和软件工具将被整合到亚利桑那州立大学的本科生物理课程中,并将为在亚利桑那州立大学的公共推广活动中展示的交互式衍射式X射线成像显示器提供基础。这些教育计划与现有的NSF BioXFEL科技中心和亚利桑那州立大学生物设计院的紧凑型X射线光源设施高度协同。科学研究的目标是对能够揭示蛋白质等生物分子的详细三维结构和功能动力学的测量技术的普遍需求。它开发了X射线散射方法来确定结构,而不需要生长宏观蛋白质晶体或冷冻样品,这两种方法都是现有技术的要求,可能会限制它们对动态分子的有效性。X射线自由电子激光被用来通过仅10飞秒(10-14秒)的强烈超短X射线脉冲超越原子运动来产生快照散射图案。与传统的X射线溶液散射不同,快照散射图案之间的两点强度相关性分析可以直接产生三维结构,在有利的情况下,允许对嵌入复杂环境中的原子子结构进行化学选择性成像。结构变化可以及时排序,通过延迟快照,直到反应被闪光、温度跳跃或其他机制触发后不久才形成“分子电影”。这些方法适用于各种各样的生物分子系统,其中包括参与光合作用、视觉、病毒感染和调节活细胞和生物体几乎所有重要过程的信号过程的蛋白质。在这项研究过程中研究的模型蛋白质系统将阐明光激活蛋白质运动的超快动力学。除了在同行评议的期刊上发表成果和在科学会议上作介绍外,还将公布X射线散射数据和分析软件,并将有助于超快X射线成像科学的全面发展。同样,在研究过程中开发的创新硬件技术,如用于生产液体纳米液滴的微喷嘴设计,将公开提供。该奖项反映了NSF的法定使命,并通过使用基金会的智力优势和更广泛的影响审查标准进行评估,被认为值得支持。
英文摘要
An award is made to Arizona State University (ASU) for the development of new biomolecular imaging techniques that exploit the unique capabilities of ultrabright x-ray sources. The research aims to enable broadly applicable methods of visualizing dynamic motions of proteins and other biomolecules in solution at physiological temperature. The education plan integrates undergraduate and PhD students into the specific research project, as well as the broader initiative to develop ultrafast x-ray science at ASU. Opportunities are tailored to undergraduate first-generation community college transfer students to engage in mentored independent research at ASU. A team of undergraduate and PhD students will work together toward complementary research goals and will travel to large-scale laboratory facilities, such as the Linac Coherent Light Source at SLAC National lab, to learn how diverse teams of scientists work together. Student career development will be supported through cross-training opportunities at collaborator institutes, participation in international conferences, assistance with individual development plans, and other forms of mentorship. A new freely available open-source software suite will be developed as a pedagogical tool to help a broader audience of students master x-ray data analysis methods and explore new imaging concepts. A complementary optical diffractive imaging laboratory apparatus will be developed to teach experimental techniques. These hardware and software tools will be integrated into undergraduate physics curriculum at ASU and will also provide a foundation for an interactive diffractive x-ray imaging display to be showcased at public outreach events at ASU. The educational plans are highly synergistic with the existing NSF BioXFEL Science and Technology Center and the Compact X-Ray Light Source facility at ASU’s Biodesign Institute.The scientific research targets the general need for measurement techniques that can reveal detailed three- dimensional structures and functional dynamics of biomolecules such as proteins. It develops x-ray scattering methods to determine structures without the need to grow macroscopic protein crystals or to cryogenically freeze samples, both of which are requirements of existing techniques that can limit their effectiveness for dynamic molecules. X-ray free-electron lasers are used to produce snapshot scattering patterns by outrunning atomic motions with intense ultrashort x-ray pulses of just 10 femtoseconds (10-14 seconds). Unlike conventional x-ray solution scattering, the analysis of two-point intensity correlations amongst snapshot scattering patterns can directly yield three-dimensional structures, and in favorable cases allows for chemically selective imaging of atomic sub-structures embedded in complex environments. Structural changes may be sequenced in time to form “molecular movies” by delaying snapshots until shortly after reactions are triggered with light flashes, temperature jumps, or by other mechanisms. These methods are applicable to a broad variety of biomolecular systems which includes, among numerous examples, proteins that are involved in photosynthesis, vision, viral infection, and signaling processes that regulate nearly all vital processes in living cells and organisms. Model protein systems studied in the course of this research will elucidate ultrafast dynamics of light-activated protein motions. In addition to the publication of results in peer-reviewed journals and presentations at scientific conferences, x-ray scattering data and analysis software will be made publicly available and will contribute to the general development of ultrafast x-ray imaging science. Similarly, innovative hardware technologies developed in the course of the research, such as micro-nozzle designs for the production of liquid nanodroplets, will be made publicly available.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
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DOI:
10.1364/optica.410851
发表时间:
2021-01-20
期刊:
OPTICA
影响因子:
10.4
作者:
[Ayyer, Kartik, Xavier, P. Lourdu, Chapman, Henry N.]
通讯作者:
Chapman, Henry N.
A new solution to the curved Ewald sphere problem for 3D image reconstruction in electron microscopy
DOI:
10.1016/j.ultramic.2021.113234
发表时间:
2021-02-27
期刊:
ULTRAMICROSCOPY
影响因子:
2.2
作者:
[Chen, J. P. J., Schmidt, K. E., Kirian, R. A.]
通讯作者:
Kirian, R. A.
DOI:
10.1016/j.bpr.2022.100081
发表时间:
2022-12-14
期刊:
BIOPHYSICAL REPORTS
影响因子:
--
作者:
[Sonker, Mukul, Doppler, Diandra, Egatz-Gomez, Ana, Zaare, Sahba, Rabbani, Mohammad T, Manna, Abhik, Cruz Villarreal, Jorvani, Nelson, Garrett, Ketawala, Gihan K, Karpos, Konstantinos, Alvarez, Roberto C, Nazari, Reza, Thifault, Darren, Jernigan, Rebecca, Oberthur, Dominik, Han, Huijong, Sierra, Raymond, Hunter, Mark S, Batyuk, Alexander, Kupitz, Christopher J, Sublett, Robert E, Poitevin, Frederic, Lisova, Stella, Mariani, Valerio, Tolstikova, Alexandra, Boutet, Sebastien, Messerschmidt, Marc, Meza-Aguilar, J Domingo, Fromme, Raimund, Martin-Garcia, Jose M, Botha, Sabine, Fromme, Petra, Grant, Thomas D, Kirian, Richard A, Ros, Alexandra]
通讯作者:
Ros, Alexandra
Optical Funnel to Guide and Focus Virus Particles for X-Ray Diffractive Imaging
用于引导和聚焦 X 射线衍射成像病毒颗粒的光学漏斗
DOI:
10.1103/physrevapplied.17.044044
发表时间:
2022
期刊:
Physical Review Applied
影响因子:
4.6
作者:
[Awel, Salah, Lavin-Varela, Sebastian, Roth, Nils, Horke, Daniel A., Rode, Andrei V., Kirian, Richard A., Küpper, Jochen, Chapman, Henry N.]
通讯作者:
Chapman, Henry N.
Inter-Bragg crystallographic phase retrieval from shape transforms, stacking faults and substitutional disorder
从形状变换、堆垛层错和替代无序中检索布拉格间晶体相
DOI:
10.1016/j.ultramic.2023.113728
发表时间:
2023
期刊:
Ultramicroscopy
影响因子:
2.2
作者:
[Chen, J.P.J., Pande, K., Donatelli, J.J., Martin, A.V., Ayyer, K., Chapman, H.N., Bean, R., Schmidt, K.E., Kirian, R.A.]
通讯作者:
Kirian, R.A.
共 7 条
ABI Innovation: New Algorithms for Biological X-ray Free Electron Laser Data
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批准号:1565180
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项目类别:Continuing Grant
-
资助金额:$76.16万
-
财政年份:2016
-
负责人:Richard Kirian
-
依托单位:
国内基金
海外基金
非小细胞肺癌Biomarker的Imaging MS研究新方法
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批准号:30672394
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项目类别:面上项目
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资助金额:30.0万元
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批准年份:2006
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负责人:陆豪杰
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依托单位: