Developing High-Resolution Ion Mobility Spectrometry-Charge Detection-Mass Spectrometry for Rapid Analysis in the Megadalton to Gigadalton Regime
Developing High-Resolution Ion Mobility Spectrometry-Charge Detection-Mass Spectrometry for Rapid Analysis in the Megadalton to Gigadalton Regime
批准号:
10295181
负责人:
DAVID E. CLEMMER
金额:
$50.29万
依托单位国家:
美国
项目类别:
财政年份:
2018
资助国家:
美国
项目状态:
已结题
起止时间:
2018-12-15 至 2024-11-30
关键词:
AddressAmplifiersAntibodiesAreaAtherosclerosisBindingCapsidCardiovascular DiseasesCause of DeathChargeComplementComplexComplex MixturesComputer SimulationCoupledDataData CollectionDetectionDevelopmentDiagnostic testsEnsureFractionationGene Transduction AgentGenetic LoadGenetic MaterialsGenomeHealthHigh Density LipoproteinsHourHumanIndividualIonsLeadLipoproteinsLow-Density LipoproteinsMass Spectrum AnalysisMeasurementMeasuresMolecularMolecular WeightNoisePathogenesisPatternPharmaceutical PreparationsPlasmaPlayResearchResolutionRoleSamplingSpectrometrySpeedStructural defectStructureSystemTechnologyTestingTherapeuticTimeTubeVariantVery low density lipoproteinViral GenesViral ProteinsVirionVirusVirus AssemblyWorkanalytical methodbasecardiovascular disorder riskcardiovascular risk factordesigndetectorgene therapyimprovedinstrumention mobilitynew therapeutic targetnovelnovel strategiesprogramsprotein complexprototypetooltransmission processwhole genome
中文摘要
项目摘要
该项目将推进一种新的质谱学技术--电荷检测质谱学
(CDMS)用于分析10到100 nm尺寸范围内的大的生物分子组件(即,具有分子
~1MDA~1GDA的重量)。在这种大小范围内的物种,如病毒和脂蛋白,在
人类健康。然而,它们很难被发现和表征。传统的MS仪器可以
确定许多类型的生物分子的质量和碎裂模式,包括组件;但是,
测量仅限于~1丙二醛以下的物种。在CDMS中,单个离子的质量直接
通过同时测量每个离子的质荷比和电荷来确定。原则证明
使用我们的CDMS原型进行的研究表明,准确的质量可以被确定为丙二醛到GDA
政权。如本提案所示,这是一个有利的进步。然而,我们的原型设计有一个有限的
质量分辨率(我们测得的最大质量分辨率为m/Δm~330)。以及,测量所需的时间
完整的光谱使该仪器不适用于常规分析。该项目描述了进展情况
这将提高CDMS的分辨率和光谱获取速度-每个至少提高一个数量级
规模之大。这将允许对大物种的高分辨率质谱图进行常规记录
时间到了。我们还将开发用于CDMS的离子迁移率光谱(IMS)接口。IMS分离将
提高了整体峰容量,简化了非均相混合物的CDMS分析。在……里面
此外,离子的迁移率取决于其结构,因此提供了补充
来自CDMS的电荷和质量信息。组合的高分辨率IMS-CDMS仪器将提供
分析生物大分子的强有力的新方法。一旦校准和测试,IMS-CDMS
仪器将被用来调查许多对人类健康重要的问题。其中包括:病毒
组装和拆解,表征基因治疗载体,与病毒结合的药物和抗体,
以及脂蛋白亚类的鉴定。这样的测量具有变革的潜力。病毒基因
例如,治疗载体很难描述,因为它们很大,而且因为基因
物质被包含在病毒衣壳中。关键问题,例如衣壳是否包含完整的基因组,
必须解决部分基因组或没有基因组的问题。高分辨率IMS-CDMS测量将提供
关于微小结构缺陷的信息,这些缺陷很难(如果不是不可能)通过其他方法检测到。
同样,IMS-CDMS分析将影响其他领域,如心血管疾病--导致
美国的死亡事件。血浆脂蛋白在动脉粥样硬化的主要潜在原因中起着关键作用。然而,
主要的类别,高密度脂蛋白、低密度脂蛋白和极低密度脂蛋白,都以大小和组成的广泛分布存在。划定
子类的分类将使开发更可靠的诊断测试和更好的疗法成为可能。初步
结果表明,高分辨率IMS-CDMS将能够拆分关键的脂蛋白亚类。
英文摘要
Project Summary
This project will advance a new mass spectrometry (MS) technology, charge detection mass spectrometry
(CDMS) for analyzing large biomolecular assemblies in the 10 to 100 nm size range (i.e., having molecular
weights of ~1 MDa to 1 GDa). Species in this size range, such as viruses and lipoproteins, play critical roles in
human health. However, they are difficult to detect and characterize. Conventional MS instruments can
determine masses and fragmentation patterns of many types of biomolecules, including assemblies; but, such
measurements are limited to species below ~1 MDa. In CDMS, the masses of individual ions are directly
determined from simultaneous measurement of each ion’s mass-to-charge ratio and charge. Proof-of-principle
studies using our CDMS prototype, show that accurate masses can be determined into the MDa to GDa
regime. As shown in this proposal, this is an enabling advance. However, our prototype design has a limited
mass resolving power (the maximum we have measured is m/Δm ~ 330). And, the time required for measuring
a complete spectrum makes this instrument impractical for routine analyses. This project describes advances
that will improve both the CDMS resolving power and spectrum acquisition speed – each by at least an order
of magnitude. This will allow high-resolution mass spectra for large species to be routinely recorded for the first
time. We will also develop an ion mobility spectrometry (IMS) interface for CDMS. The IMS separation will
improve the overall peak capacity and simplify the analysis of heterogeneous mixtures by CDMS analysis. In
addition, the mobility of an ion depends on its structure and thus provides information that complements the
charge and mass information from CDMS. The combined high-resolution IMS-CDMS instrument will provide a
powerful new approach for the analysis of large biomolecules. Once calibrated and tested, the IMS-CDMS
instrument will be used to investigate numerous problems important to human health. These include: virus
assembly and disassembly, the characterization gene therapy vectors, drug and antibody binding to viruses,
and the identification of lipoprotein subclasses. Such measurements have transformative potential. Viral gene
therapy vectors, for example, are difficult to characterize because of their large sizes and because the genetic
material is contained within virus capsids. Critical issues, such as whether capsids contain the full genome,
partial genomes, or no genome, must be addressed. High-resolution IMS-CDMS measurements will provide
information about small structural defects, which are difficult (if not impossible) to detect by other means.
Similarly, IMS-CDMS analyses will impact other areas, such as cardiovascular diseases - the leading cause of
death in the US. Plasma lipoproteins play a key role in the main underlying cause, atherosclerosis. However,
the major classes, HDL, LDL, and VLDL, all exist as broad distributions of sizes and compositions. Delineation
of subclasses will enable development of more reliable diagnostic tests and better therapeutics. Preliminary
results indicate that high-resolution IMS-CDMS will be able to resolve key lipoprotein subclasses.
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DOI:
10.1021/acs.analchem.1c00870
发表时间:
2021-05-11
期刊:
Analytical chemistry
影响因子:
7.4
作者:
[McCabe JW, Shirzadeh M, Walker TE, Lin CW, Jones BJ, Wysocki VH, Barondeau DP, Clemmer DE, Laganowsky A, Russell DH]
通讯作者:
Russell DH
CDMS Analysis of Intact 19S, 20S, 26S, and 30S Proteasomes: Evidence for Higher-Order 20S Assemblies at a Low pH†.
完整 19S、20S、26S 和 30S 蛋白酶体的 CDMS 分析:低 pH 下高阶 20S 组装的证据。
DOI:
10.1021/acs.analchem.3c00472
发表时间:
2023
期刊:
Analytical chemistry
影响因子:
7.4
作者:
[Anthony,AdamJ, Gautam,AmitKS, Miller,LohraM, Ma,Yiran, Hardwick,AnyaG, Sharma,Anu, Ghatak,Subhadip, Matouschek,Andreas, Jarrold,MartinF, Clemmer,DavidE]
通讯作者:
Clemmer,DavidE
Stability of 20S Proteasome Configurations: Preopening the Axial Gate.
20S 蛋白酶体配置的稳定性:预打开轴门。
DOI:
10.1021/acs.jpclett.3c01040
发表时间:
2023
期刊:
The journal of physical chemistry letters
影响因子:
--
作者:
[Henderson,LucasW, Sharon,EdieM, Gautam,AmitKS, Anthony,AdamJ, Jarrold,MartinF, Russell,DavidH, Matouschek,Andreas, Clemmer,DavidE]
通讯作者:
Clemmer,DavidE
Dramatic Improvement in Sensitivity with Pulsed Mode Charge Detection Mass Spectrometry.
脉冲模式电荷检测质谱法的灵敏度显着提高。
DOI:
10.1021/acs.analchem.9b03586
发表时间:
2019
期刊:
Analytical chemistry
影响因子:
7.4
作者:
[Todd,AaronR, Jarrold,MartinF]
通讯作者:
Jarrold,MartinF
Charge detection mass spectrometry for the analysis of viruses and virus-like particles.
用于分析病毒和病毒样颗粒的电荷检测质谱法。
DOI:
10.1042/ebc20220101
发表时间:
2023
期刊:
Essays in biochemistry
影响因子:
6.4
作者:
[Miller,LohraM, Jarrold,MartinF]
通讯作者:
Jarrold,MartinF
共 11 条
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Developing High-Resolution Ion Mobility Spectrometry-Charge Detection-Mass Spectrometry for Rapid Analysis in the Megadalton to Gigadalton Regime
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海外基金