Core F: Structure
Core F: Structure
批准号:
7980201
负责人:
JOHN A GERLT
金额:
$76.19万
依托单位国家:
美国
项目类别:
财政年份:
2010
资助国家:
美国
项目状态:
已结题
起止时间:
2010-05-20 至 2015-04-30
关键词:
AddressBindingCharacteristicsCommunicationComputer SimulationCore ProteinCrystallizationDataData CollectionDepositionDockingEvaluationEvolutionExhibitsFamilyFosteringFundingGoalsIndividualInterventionLigandsManualsModelingNew YorkPositioning AttributeProductionProtein Structure InitiativeProteinsRecording of previous eventsResearchResearch InfrastructureResourcesStagingStructureSystemTriageWorkbasedesigndesign and constructionexperienceflexibilityinsightmeetingsmemberprotein distributionprotein purificationstructural genomics
中文摘要
虽然非洲联盟的基础设施和组织受到《防扩散安全倡议》的启发,但它们的目标有很大的不同,这为非洲联盟提供了独特的机会。历史上,PSI的主要焦点一直是增加折叠和序列空间的结构覆盖,并且特定序列家族的任何成员的结构都是整个家族的合适代表。因此,所有防扩散安全倡议的目标都是
进行广泛的分类,并且只有那些在流水线的每一步表现出高度有利特征的序列才被用于结构确定。这种方法使折叠/序列覆盖最大化,而不管功能重要性如何。与此相反,基因组学明确地关注功能的发现,因此将经常需要研究基因组学序列,需要付出超过这些的努力。
通常用于任何单独的PSI目标。因此,PC和SC被定位为在蛋白质纯化、结晶、数据收集和结构确定中实施相当多的初级和次级拯救策略,以便成功地起诉那些在功能、机制和进化方面信息最丰富的靶标。特别是,如下文所述,
SC准备在结晶、数据收集和结构测定方面提供广泛和扩展的努力。此外,除了结构发现管道的这些传统方面,SC将投入大量资源用于配体鉴定工作,以1)获得直接的功能见解,2)帮助结晶,3)最大限度地利用结构进行计算配体发现。
英文摘要
While the infrastructure and organization of the EFI are inspired by the PSI, there are significant differences in their objectives, which offer unique opportunities for the EFI. Historically, the primary focus of the PSI has been on increasing the structural coverage of fold and sequence space, and the structure of any member of a particular sequence family is a suitable representative of the entire family. Consequently, all PSI targets are
subjected to extensive triage, and only those sequences exhibiting highly favorable characteristics at each step of the pipeline are taken fonward for structure determination. This approach maximizes fold/sequence coverage regardless of functional importance. In contrast, the EFI is explicitly concerned with the discovery of function and thus will frequently necessitate the study of recalcitrant sequences requiring efforts that exceed those
commonly expended on any individual PSI target. Accordingly, the PC and SC are positioned to implement considerable primary and secondary rescue strategies in protein purification, crystallization, data collection and structure determination in order to successfully prosecute those targets that are most informative in terms of function, mechanism and evolution. In particular, as needed and detailed below, the expert technical staff of
the SC is prepared to provide extensive and expanded efforts in crystallization, data collection and structure determination. Furthermore, beyond these traditional aspects of the structure discovery pipeline, the SC will devote considerable resources to ligand identification efforts in order to 1) obtain direct functional insights, 2) aid in crystallization, and 3) maximize the utility of structures for computational ligand discovery.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Web-Based Resource for Genomic Enzymology Tools
-
批准号:10548888
-
项目类别:
-
资助金额:$56.12万
-
财政年份:2022
-
负责人:JOHN A GERLT
-
依托单位:
Novel Strategies for the Discovery of Microbial Metabolic Pathways
-
批准号:9918932
-
项目类别:
-
资助金额:$232.88万
-
财政年份:2016
-
负责人:JOHN A GERLT
-
依托单位:
Novel Strategies for the Discovery of Microbial Metabolic Pathways
-
批准号:9297333
-
项目类别:
-
资助金额:$232.88万
-
财政年份:2016
-
负责人:JOHN A GERLT
-
依托单位:
Metabolism Project
-
批准号:9073786
-
项目类别:
-
资助金额:$42.29万
-
财政年份:2016
-
负责人:JOHN A GERLT
-
依托单位:
Novel Strategies for the Discovery of Microbial Metabolic Pathways
-
批准号:9557783
-
项目类别:
-
资助金额:$11.68万
-
财政年份:2016
-
负责人:JOHN A GERLT
-
依托单位:
GENOMIC ENZYMOLOGY: THE ENOLASE SUPERFAMILY AND OMPDC SUPRAFAMILY
-
批准号:8363583
-
项目类别:
-
资助金额:$1.68万
-
财政年份:2011
-
负责人:JOHN A GERLT
-
依托单位:
DECIPHERING ENZYME SPECIFICITY
-
批准号:8363605
-
项目类别:
-
资助金额:$1.68万
-
财政年份:2011
-
负责人:JOHN A GERLT
-
依托单位:
COLLABORATIVE CENTER FOR AN ENZYME FUNCTION INITIATIVE
-
批准号:7901811
-
项目类别:
-
资助金额:$702.3万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Core A: Administrative Core
-
批准号:7980192
-
项目类别:
-
资助金额:$49.22万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
GENOMIC ENZYMOLOGY: THE ENOLASE SUPERFAMILY AND OMPDC SUPRAFAMILY
-
批准号:8170502
-
项目类别:
-
资助金额:$1.79万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Core G: Computation
-
批准号:7980202
-
项目类别:
-
资助金额:$103.88万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Core D: Superfamily/Genome
-
批准号:7980199
-
项目类别:
-
资助金额:$35.29万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
DECIPHERING ENZYME SPECIFICITY
-
批准号:8170532
-
项目类别:
-
资助金额:$1.79万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
COLLABORATIVE CENTER FOR AN ENZYME FUNCTION INITIATIVE
-
批准号:8489131
-
项目类别:
-
资助金额:$625.01万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
COLLABORATIVE CENTER FOR AN ENZYME FUNCTION INITIATIVE
-
批准号:8074489
-
项目类别:
-
资助金额:$647.68万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Bridging Project 4: Haloacid Dehalogenase (HAD) Superfamily
-
批准号:7980210
-
项目类别:
-
资助金额:$40.76万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
COLLABORATIVE CENTER FOR AN ENZYME FUNCTION INITIATIVE
-
批准号:8665973
-
项目类别:
-
资助金额:$582.91万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Bridging Project 3: Glutathione Transferase (GST) Superfamily
-
批准号:7980209
-
项目类别:
-
资助金额:$30.12万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Core B/C: Data & Dissemination
-
批准号:7980195
-
项目类别:
-
资助金额:$39.36万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
Core E: Protein
-
批准号:7980200
-
项目类别:
-
资助金额:$167.1万
-
财政年份:2010
-
负责人:JOHN A GERLT
-
依托单位:
国内基金
海外基金
登录
查看更多内容
帽结合蛋白(cap binding protein)调控乙烯信号转导的分子机制
-
批准号:32170319
-
项目类别:面上项目
-
资助金额:58.00万元
-
批准年份:2021
-
负责人:董春海
-
依托单位:
帽结合蛋白(cap binding protein)调控乙烯信号转导的分子机制
-
批准号:--
-
项目类别:--
-
资助金额:58万元
-
批准年份:2021
-
负责人:董春海
-
依托单位:
ID1 (Inhibitor of DNA binding 1) 在口蹄疫病毒感染中作用机制的研究
-
批准号:31672538
-
项目类别:面上项目
-
资助金额:62.0万元
-
批准年份:2016
-
负责人:孙跃峰
-
依托单位:
番茄EIN3-binding F-box蛋白2超表达诱导单性结实和果实成熟异常的机制研究
-
批准号:31372080
-
项目类别:面上项目
-
资助金额:80.0万元
-
批准年份:2013
-
负责人:杨迎伍
-
依托单位:
P53 binding protein 1 调控乳腺癌进展转移及化疗敏感性的机制研究
-
批准号:81172529
-
项目类别:面上项目
-
资助金额:58.0万元
-
批准年份:2011
-
负责人:杨其峰
-
依托单位:
DBP(Vitamin D Binding Protein)在多发性硬化中的作用和相关机制的蛋白质组学研究
-
批准号:81070952
-
项目类别:面上项目
-
资助金额:35.0万元
-
批准年份:2010
-
负责人:刘师莲
-
依托单位:
研究EB1(End-Binding protein 1)的癌基因特性及作用机制
-
批准号:30672361
-
项目类别:面上项目
-
资助金额:24.0万元
-
批准年份:2006
-
负责人:徐宁志
-
依托单位: