Identifizierung und Charakterisierung von Parent-of-origin Effekten beim atopischen Ekzem - Identification and functional analysis of parent-of-origin effects in eczema

湿疹母源效应的鉴定和功能分析

• 批准号: 181901646
• 负责人: Professorin Dr. Young-Ae Lee
• 金额: --
• 依托单位: Experimental and Clinical Research Center (ECRC)
• 依托单位国家: 德国
• 项目类别: Research Grants
• 财政年份: 2010
• 资助国家: 德国
• 起止时间: 2009-12-31 至 2014-12-31
• 项目状态: 已结题
• 来源: https://gepris.dfg.de/gepris/projekt/181901646?language=en
• 关键词: Identifizierung; und; Charakterisierung; von; Parent

Eczema is a common chronic inflammatory skin disease with complex etiology. Independent studies have shown that children eczema-affected mothers have a higher risk to develop the disease than children of eczema-affected fathers (parent-of-origin effect). Parent-of-origin effects may be due to genomic imprinting and/or feto-maternal interaction during pregnancy or lactation (maternal effect). We propose to study parent-of-origin effects in eczema by analyzing a set of 270 complete nuclear families with eczema in which high-density SNP data is available in our laboratory. Interestingly, in these families the frequency of eczema is much higher in the mothers than in the fathers (32% versus 18%, respectively), supporting the existence of parent-of-origin effects. We have analyzed the genotype data using the parent-of-origin likelihood ratio test (PO-LRT test) to detect of parent-of-origin and maternal effects. Importantly, our scan tends to identify genomic regions containing predicted or experimentally validated imprinted genes, supporting the validity of our approach (P < 0.05). We propose to select a set of 96 SNPs showing imprinting or maternal effects based on our PO-LRT results and to test them for replication in an independent sample of 1000 eczema families. Expression and epigenetic analyses will be performed in order to provide functional evidence of imprinting for the candidate genes identified. This will be the first study addressing parent-of-origin effects in eczema at a genome-wide level, providing novel information on this interesting aspect of the disease etiology.

湿疹是一种常见的慢性炎症性皮肤病，病因复杂。独立的研究表明，患湿疹的母亲的孩子比患湿疹的父亲的孩子有更高的患病风险（父母的起源效应）。母体效应可能是由于妊娠或哺乳期间的基因组印记和/或胎儿-母体相互作用（母体效应）。我们建议通过分析一组270个完整的湿疹核心家庭，其中高密度的SNP数据在我们的实验室中，以研究湿疹的父母的起源影响。有趣的是，在这些家庭中，母亲患湿疹的频率比父亲高得多（分别为32%和18%），这支持了父母起源效应的存在。我们分析了基因型数据，使用父母的起源似然比检验（PO-LRT检验），以检测父母的起源和母亲的影响。重要的是，我们的扫描倾向于识别含有预测或实验验证的印迹基因的基因组区域，支持我们的方法的有效性（P < 0.05）。我们建议选择一组96个单核苷酸多态性显示印记或母体的影响，我们的PO-LRT结果的基础上，并测试他们的复制在一个独立的样本1000湿疹家庭。将进行表达和表观遗传学分析，以提供识别的候选基因的印记的功能证据。这将是第一个在全基因组水平上解决湿疹中父母起源效应的研究，为疾病病因学的这一有趣方面提供了新的信息。