NEIBank: Est Analysis and Bioinformatics for Ocular Geno

NEIBank：眼基因的 Est 分析和生物信息学

• 批准号: 6968517
• 负责人: Graeme J Wistow
• 金额: --
• 依托单位: NATIONAL EYE INSTITUTE
• 依托单位国家: 美国
• 资助国家: 美国
• 起止时间: 至
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/6968517
• 关键词: animal genetic material tag; animal tissue; bioinformatics; complementary DNA; computer assisted sequence analysis; computer program /software; eye; eye disorder; functional /structural genomics; gene expression; genetic library; genetic mapping; genetic registry /resource /referral center; genetically modified animals; human genetic material tag; human tissue; information dissemination; laboratory mouse; microarray technology; molecular biology information system; sequence tagged sites

The eye is a complex system of highly differentiated tissues of various developmental origins. Many genes essential for eye function are tissue-specific and many of those known are associated with genetic eye diseases. The majority of human expressed genes are known only through expressed sequence tags (ESTs). A project called NEIBank was begun to improve the EST coverage and to develop a molecular encyclopedia for the eye (http://neibank.nei.nih.gov). Many human eye (and also ear)tissues and those of important animal models have now been analyzed. Recent additions are human and mouse lacrimal gland, keratoconus cornea, mouse retina and RPE and several libraries from dog, rabbit and zebrafish tissues. The human DNA resource generated by this work has been used to create cDNA microarrays with 13,000 non-redundant human eye expressed sequences and 6500 sequences from mouse eye. This database is also an important source of gene discovery. Several genes are under further investigation, including lengsin, a marker for terminal differentiation in the lens; PDGF-D, a important mitogen for lens development that is secreted into the aqueous humor and is also expressed in the outer plexiform layer of the retina; retbindin a candidate carotenoid binding protein of the retina; and a novel cornea-specific gene that may be associated with stem cell populations. Mouse models for the function of these genes are being developed using "recombineering" technology. A recent addition to the informatics tools for eye research is EyeBrowse, a dedicated genome browser for eye-expressed genes, produced in collaboration with CIT. http://eyebrowse.cit.nih.gov/genome/

眼睛是一个复杂的系统，由各种发育起源的高度分化的组织组成。许多对眼睛功能至关重要的基因是组织特异性的，其中许多已知的基因与遗传性眼病有关。大多数人类表达的基因仅通过表达序列标签（EST）已知。开始了一个名为NEIBank的项目，以提高EST的覆盖率，并为眼睛开发一个分子百科全书（http：neibank.nei.nih.gov）。许多人的眼睛（和耳朵）组织和重要的动物模型现在已经被分析。最近增加的是人类和小鼠泪腺、圆锥角膜、小鼠视网膜和RPE以及来自狗、兔和斑马鱼组织的几个文库。本工作产生的人类DNA资源已用于创建具有13，000个非冗余人眼表达序列和6500个来自小鼠眼睛的序列的cDNA微阵列。该数据库也是基因发现的重要来源。有几个基因正在进一步研究中，包括：白细胞介素，一种透镜终末分化的标志物; PDGF-D，一种分泌到眼房水中并在视网膜外丛状层中表达的透镜发育的重要促分裂原;视网膜结合素，一种视网膜的候选类胡萝卜素结合蛋白;以及一种可能与干细胞群相关的新的角膜特异性基因。目前正在利用“重组工程”技术开发这些基因功能的小鼠模型。 眼睛研究的信息学工具最近增加了EyeBrowse，这是与CIT合作开发的眼睛表达基因的专用基因组浏览器。http://eyebrowse.cit.nih.gov/genome/