Genome sequencing of foodborne pathogens by the Pennsylvania GenomeTrakr group

宾夕法尼亚州 GenomeTrakr 小组对食源性病原体进行基因组测序

• 批准号: 10662276
• 负责人: Edward G. Dudley
• 金额: $ 18万
• 依托单位: PENNSYLVANIA STATE UNIVERSITY, THE
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-09-01 至 2025-06-30
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10662276
• 关键词: Genome; sequencing; foodborne; pathogens; Pennsylvania

Project summary/abstract (Overall) The state of Pennsylvania and its associated GenomeTrakr network has consistently met all obligations of the Food and Drug Administration’s program since joining in 2016. The required personnel have worked seamlessly together, and effective standard operating procedures have led to the uploading of over 2,000 quality genomes and associated metadata to public databases. For this next funding cycle, we will continue this trajectory while looking for opportunities to expand our impact within the Commonwealth, particularly with the Pennsylvania Department of Agriculture. We will additionally expand our international reach to further diversify collections submitted to the Pathogen Detection database and to provide isolates for sequencing by other GenomeTrakr partners.

项目概要/摘要（总体） 宾夕法尼亚州及其相关 GenomeTrakr 网络始终满足所有要求 自 2016 年加入以来，食品和药物管理局计划的义务。 所需人员无缝协作，有效的标准操作 程序已上传超过 2,000 个优质基因组和相关内容 元数据到公共数据库。对于下一个融资周期，我们将继续这一轨迹 在寻找机会扩大我们在英联邦内的影响力的同时， 特别是与宾夕法尼亚州农业部的合作。我们将另外扩展 我们的国际影响力进一步丰富了提交给病原体检测的收集品 数据库并提供分离株供其他 GenomeTrakr 合作伙伴进行测序。

项目成果

Genomic characterization of Listeria monocytogenes and Listeria innocua isolated from milk and dairy samples in Ethiopia.

• DOI: 10.1186/s12863-024-01195-0
• 发表时间: 2024-01-31
• 期刊: BMC genomic data
• 影响因子: 1.9

Exploring Antimicrobial Resistance Profiles of E. coli Isolates in Dairy Cattle: A Baseline Study across Dairy Farms with Varied Husbandry Practices in Puerto Rico.

• DOI: 10.3390/microorganisms11122879
• 发表时间: 2023-11-28
• 期刊: MICROORGANISMS
• 影响因子: 4.5
• 作者: Malavez, Yadira;Nieves-Miranda, Sharon M.;Loperena Gonzalez, Paola N.;Padin-Lopez, Adrian F.;Xiaoli, Lingzi;Dudley, Edward G.
• 通讯作者: Dudley, Edward G.