Genomics and Bioinformatics Group web site development and maintenance
Genomics and Bioinformatics Group web site development and maintenance
批准号:
10703057
负责人:
William Reinhold
金额:
$23.66万
依托单位国家:
美国
项目类别:
财政年份:
--
资助国家:
美国
项目状态:
未结题
起止时间:
至
关键词:
AntibodiesBindingBioinformaticsBiologicalCancer PatientCancer cell lineCancerousCell LineChemicalsComputer softwareCountryDataData SetDatabasesDevelopmentDevelopmental Therapeutics ProgramDisciplineDrug usageExonsExtramural ActivitiesGenerationsGenesGenomicsGoalsImageIndividualInformaticsLaboratoriesLeadMaintenanceMammalian CellMapsMetadataMiningMolecularMolecular BiologyOntologyPatternPersonsPharmaceutical PreparationsPharmacogenomicsPharmacologyProtein IsoformsRegression AnalysisResearchResourcesScientistSeriesSiteSolidSpliced GenesSystemTechnologyTimeTrainingTranscriptVariantanticancer activitydata toolsdesigndigital repositoriesdrug discoverygenetic variantgenomic dataimprovedlung small cell carcinomamolecular scalenovel therapeuticspersonalized cancer therapyquality assurancerepositorytherapy outcometoolweb appweb siteweb-based tool
中文摘要
我们正在成功地维护和扩展Discover基于网络的工具,重点是CellMiner和CellMinerCDB的。我们的CellMiner“NCI-60分析工具”部分仍然是药物基因组学整合、研究和发现的重要资源。它目前是四种工具的主机,i)“细胞系签名”,ii)相互关联“,iii)模式比较”,以及iv)“药物与基因变体/异构体变体”,所有这些工具都旨在减少科学家整合分子和药理学数据所需的时间。在本节中,我们将继续升级软件和数据库。我们目前提供了大规模细胞数据库中最具包容性的一组分子和最大的化合物活性数据。CellMiner的数据和工具正在为癌症患者的合理药物发现、应用和个体化治疗方面的进展创造重大机会。由于多种类型的分子改变可以影响治疗结果,基因组和药理学设施(GPF)以这样一种方式管理和整合分子和药理学数据,以增强理解,并促进可检验假说的产生。因此,GPF既提供了对高吞吐量数据的访问,又提供了促进数据挖掘、理解和利用的软件资源。由于DTP药物数据库包含未探索的化合物和药物,它仍然是识别潜在新药和增进对现有药物的理解的无与伦比的资源。NCI-60是迄今为止最全面的哺乳动物细胞图谱。CellMiner CDB将这种方法扩展到包括附加数据库,允许用户随意挖掘和集成。目前,我们的Discover和CellMiner网站每月有来自90个国家和地区的8400名个人用户。它在过去是这样做的,目前仍在继续带来翻译发现。
英文摘要
We are successfully maintaining and expanding the Discover web-based tools, with emphasis on CellMiner and the CellMinerCDB's. Our CellMiner "NCI-60 Analysis Tools" section remains a significant resource for pharmacogenomic integration, research, and discovery. It is currently the host for four tools, i) "Cell line signature", ii) Cross-correlation", iii) Pattern comparison", and iv) "Drug vs gene variant/isoforms variant", all of which are designed to reduce the time required by the scientist to integrate molecular and pharmacological data. We continue to upgrade both the software and databases in this section. We currently provide the most inclusive set of molecular and largest compound activity data among any of the large-scale cellular databases. The CellMiner data and tools are creating major opportunities for progress in rational drug discovery, application, and individualization of therapy for cancer patients. As molecular alterations of many types can contribute to the outcome of therapy, the Genomic and Pharmacolgy Facility (GPF) manages and integrates molecular and pharmacological data in such a way that enhances understanding, and facilitates the generation of testable hypotheses. The GPF thus both provides access to high throughput data, and provides software resources that facilitate the mining, understanding, and exploitation of that data. As the DTP drug database contains both unexplored compounds and drugs, it remains an unmatched resource both for recognition of potential novel drugs, and improving understanding of pre-existing ones. The NCI-60 is by far the most comprehensively profiled panel of mammalian cells anywhere. CellMiner CDB expands this approach to include addition databases allowing the user to mine and integrate at will. Currently our Discover and CellMiner sites have 8,400 individual users from 90 countries per month. It has in the past and currently continues to lead to translational discoveries.
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会议论文
Clustering of the drug activities of the NCI-60 cancerous cell lines
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批准号:8763783
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项目类别:
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资助金额:$6.02万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities.
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批准号:8938487
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项目类别:
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资助金额:$8.95万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Genomics and Bioinformatics Group web site development and maintenance.
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批准号:9154337
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项目类别:
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资助金额:$23.25万
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财政年份:--
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负责人:William Reinhold
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依托单位:
RNA sequencing (RNA-Seq) of the NCI-60
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批准号:9780250
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项目类别:
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资助金额:$12.48万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Development of novel molecular or phenotypic databases
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批准号:10262772
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项目类别:
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资助金额:$14.3万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities
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批准号:10487249
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项目类别:
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资助金额:$4.94万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Genomics and Systems Pharmacology Core
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批准号:8763780
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项目类别:
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资助金额:$12.04万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparative genomic hybridization data and web-based tool for the NCI-60
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批准号:8763782
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项目类别:
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资助金额:$4.51万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities
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批准号:10926634
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项目类别:
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资助金额:$12.43万
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财政年份:--
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负责人:William Reinhold
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依托单位:
DNA data development for cancer cell lines and patients
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批准号:10926648
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项目类别:
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资助金额:$9.32万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities
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批准号:9556847
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项目类别:
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资助金额:$14.22万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Genomics and Bioinformatics Group web site development and maintenance
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批准号:10262761
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项目类别:
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资助金额:$38.15万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Development of novel molecular or phenotypic databases
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批准号:9344197
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项目类别:
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资助金额:$9.22万
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财政年份:--
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负责人:William Reinhold
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依托单位:
DNA data development for cancer cell lines and patients
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批准号:10487263
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项目类别:
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资助金额:$3.7万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Development of novel molecular or phenotypic databases
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批准号:9556857
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项目类别:
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资助金额:$14.22万
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财政年份:--
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负责人:William Reinhold
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依托单位:
RNA data development of cancer cell lines and patients
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批准号:10703058
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项目类别:
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资助金额:$14.79万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities
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批准号:10703059
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项目类别:
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资助金额:$11.83万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Comparison of molecular factors to drug activities
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批准号:9344187
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项目类别:
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资助金额:$12.29万
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财政年份:--
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负责人:William Reinhold
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依托单位:
RNA sequencing (RNA-Seq) of the NCI-60
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批准号:8763781
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项目类别:
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资助金额:$7.52万
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财政年份:--
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负责人:William Reinhold
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依托单位:
Genomics and Bioinformatics Group web site development and maintenance
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批准号:10487247
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项目类别:
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资助金额:$9.88万
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财政年份:--
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负责人:William Reinhold
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依托单位:
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帽结合蛋白(cap binding protein)调控乙烯信号转导的分子机制
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批准号:32170319
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项目类别:面上项目
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资助金额:58.00万元
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批准年份:2021
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负责人:董春海
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资助金额:58万元
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批准年份:2021
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ID1 (Inhibitor of DNA binding 1) 在口蹄疫病毒感染中作用机制的研究
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批准号:31672538
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资助金额:62.0万元
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批准年份:2016
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番茄EIN3-binding F-box蛋白2超表达诱导单性结实和果实成熟异常的机制研究
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P53 binding protein 1 调控乳腺癌进展转移及化疗敏感性的机制研究
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批准号:81172529
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资助金额:58.0万元
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批准年份:2011
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负责人:杨其峰
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依托单位:
DBP(Vitamin D Binding Protein)在多发性硬化中的作用和相关机制的蛋白质组学研究
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批准号:81070952
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项目类别:面上项目
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资助金额:35.0万元
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批准年份:2010
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负责人:刘师莲
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研究EB1(End-Binding protein 1)的癌基因特性及作用机制
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批准号:30672361
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项目类别:面上项目
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资助金额:24.0万元
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批准年份:2006
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负责人:徐宁志
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