Biological Magnetic Resonance Data Bank
Biological Magnetic Resonance Data Bank
批准号:
7933447
负责人:
JOHN LUTE MARKLEY
金额:
$25.0万
依托单位国家:
美国
项目类别:
财政年份:
2009
资助国家:
美国
项目状态:
已结题
起止时间:
2009-09-30 至 2011-09-29
关键词:
AddressAdoptionAdvisory CommitteesAlgorithmsAmericanArchitectureArchivesAreaBindingBiochemistryBioinformaticsBiologicalBiologyBiomedical ResearchBiomolecular Nuclear Magnetic ResonanceBudgetsCaliforniaChargeChemicalsChemistryCollaborationsCollectionCommunitiesComplexComputer softwareComputersConsultationsDataData SetDatabasesDepositionDevelopmentDictionaryDrug DesignEuropeanFactor XFrequenciesFundingFutureGenerationsGovernmentGrantHeterogeneityHumanHydrogenImageryIndustryInstitutesInstitutionInternationalJapanJournalsLigandsLinkMagnetic ResonanceMagnetic Resonance SpectroscopyMedicalMetadataMissionModelingMolecularMolecular BiologyMolecular ConformationMolecular StructureNMR SpectroscopyNatural Product DrugNomenclatureNuclearNuclear Magnetic ResonanceNucleic AcidsOntologyOperative Surgical ProceduresPeer ReviewPeptidesPharmaceutical PreparationsPoliciesPolynucleotidesPolysaccharidesProcessProteinsProteomicsProtocols documentationPublicationsRelaxationResearchResearch InstituteResearch PersonnelResourcesRetrievalReview LiteratureRoentgen RaysRoleScienceScientistSiteSocietiesSoftware ToolsSolutionsSpecific qualifier valueStreamStructureSystemTechnologyTherapeuticTimeTraining and EducationUnited States National Institutes of HealthUniversitiesValidationVideoconferencesVideoconferencingWorkchemical propertycollaboratoryconformational conversionconformerdata exchangedata miningdata modelingdatabase designdistributed dataflexibilityimprovedindexinginnovationinsightinterestmacromoleculemeetingsmembermetabolomicsnucleic acid structureprotein structureremediationrestraintsmall moleculesoftware developmentstructural biologystructural genomicssugarsymposiumthree dimensional structuretoolweb site
中文摘要
描述(由申请人提供):
英文摘要
DESCRIPTION (provided by applicant):
BioMagResBank (BMRB) is the unique worldwide resource that provides free access to the wealth of
information on biomolecules derived from nuclear magnetic resonance (NMR) spectroscopy. These NMR experimental data underlie the three-dimensional structures of many proteins and nucleic acids and provide important insights into their dynamics, chemical properties, and molecular interactions. BMRB maintains an open architecture and a defined and flexible data model that makes it possible to respond rapidly to changes in standards for data exchange and to the steady advances in NMR technology (greater variety of archived data and increasingly detailed associated metadata). Data archived at BMRB include primary data sets and derived results, such as chemical shifts, couplings, and cross relaxations associated with three-dimensional structures, parameters that specify local dynamics, pKa values assigned to specific sites, H-exchange rates, and evidence for conformational heterogeneity and molecular interactions. BMRB integrates these NMR data into a unified, global, macromolecular structure database of general utility to the broad scientific community. The growing volume and diversity of data available from BMRB are catalyzing transformative scientific applications, such as the determination of protein structure and dynamics directly from chemical shifts. BMRB and its collaborators develop improved software tools for integrating the retrieval, analysis, and display of NMR data in the context of molecular structure and conformation. As a member of the World Wide Protein Data Bank (wwPDB), BMRB has close ties with the three other wwPDB partners: the Research Collaboratory for Structural Bioinformatics (RCSB), the European Bioinformatics Institute (EBI), and the Protein Data Bank of Japan (PDBj). The ADIT-NMR deposition system developed by BMRB in collaboration with the RCSB is responsible for acquiring over 95% of the new content brought into the archive in the past year. BMRB collaborates with developers of software tools for extracting information from NMR spectral data and for validating this information. The funds requested will enable BMRB (1) to verify, reformat, archive, and distribute new data submitted electronically, (2) to maintain a productive dialogue with users and creators of biomolecular NMR data, (3) to maintain and strengthen BMRB's role in the wwPDB, (4) to collaborate with databanks specializing in related information so that useful links are created, and (5) to interact with developers of new software and algorithms that make use of biomolecular NMR data.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Biogenesis of human mitochondrial iron-sulfur proteins
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批准号:10001537
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项目类别:
-
资助金额:$35.94万
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财政年份:2019
-
负责人:JOHN LUTE MARKLEY
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依托单位:
The BMRB as an evolving resource for biomolecular structure-function research
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批准号:9462715
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项目类别:
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资助金额:$66.22万
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财政年份:2014
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负责人:JOHN LUTE MARKLEY
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依托单位:
The BMRB as an evolving resource for biomolecular structure-function research
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批准号:8615052
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项目类别:
-
资助金额:$16.12万
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财政年份:2014
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负责人:JOHN LUTE MARKLEY
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依托单位:
The BMRB as an evolving resource for biomolecular structure-function research
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批准号:9253407
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项目类别:
-
资助金额:$66.22万
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财政年份:2014
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负责人:JOHN LUTE MARKLEY
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依托单位:
The BMRB as an evolving resource for biomolecular structure-function research
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批准号:8852654
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项目类别:
-
资助金额:$66.22万
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财政年份:2014
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负责人:JOHN LUTE MARKLEY
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依托单位:
METABOLITE CHANGES IN E COLI STRAINS EVOLVED TO BE RADIATION RESISTANT
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批准号:8361207
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项目类别:
-
资助金额:$0.17万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
METHANOCALDOCOCCUS JANNASCHII COBY (MJ1117)
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批准号:8361210
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项目类别:
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资助金额:$0.2万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
STRUCTURAL ANALYSIS FOR PROTEINS FROM CESG
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批准号:8361246
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项目类别:
-
资助金额:$1.77万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
TIME IDLE & OUT OF SERVICE
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批准号:8361151
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项目类别:
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资助金额:$48.58万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
RELATIONSHIPS BETWEEN REDOX POTENTIAL, HYPERFINE SHIFTS, AND THE PKA(S)
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批准号:8361161
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项目类别:
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资助金额:$5.69万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
ISOTOPE-ASSISTED DIFFERENTIAL METABOLOMICS
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批准号:8361153
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项目类别:
-
资助金额:$1.52万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
ISOTOPE ASSISTED METABOLOMICS
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批准号:8361160
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项目类别:
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资助金额:$0.06万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
DEVELOPMENT OF NMR EXPERIMENTS FOR THE ANALYSIS OF LARGER PROTEINS
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批准号:8361188
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项目类别:
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资助金额:$1.32万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
METABOLIC RESPONSES IN E COLI TO OSMOTIC STRESS
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批准号:8361205
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项目类别:
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资助金额:$0.11万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
DEVELOPMENT OF A SEMI-AUTOMATED METABOLITE BATCH EXTRACTION DEVICE
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批准号:8361199
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项目类别:
-
资助金额:$0.36万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY SERUM ANALYSIS
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批准号:8361186
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项目类别:
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资助金额:$0.13万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
ROUTINE WEEKLY SPECTROMETER MAINTENANCE AND LIQUID NITROGEN FILLS
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批准号:8361191
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项目类别:
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资助金额:$1.65万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
HIGH THROUGHPUT STRUCTURE DETERMINATION AT CESG
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批准号:8361164
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项目类别:
-
资助金额:$7.78万
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财政年份:2011
-
负责人:JOHN LUTE MARKLEY
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依托单位:
ISOTOPE-ASSISTED DIFFERENTIAL METABOLOMICS
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批准号:8361203
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项目类别:
-
资助金额:$0.94万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
METABOLITE LEVELS IN HUMAN BLOOD SERUM PROVIDED BY NIST
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批准号:8361208
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项目类别:
-
资助金额:$0.05万
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财政年份:2011
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负责人:JOHN LUTE MARKLEY
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依托单位:
海外基金