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Impact of coding and non-coding variation in progressive supranuclear palsy

编码和非编码变异对进行性核上性麻痹的影响

基本信息

批准号：
9431079
负责人：
Giovanni Coppola
金额：
$ 124.27万
依托单位：
UNIVERSITY OF CALIFORNIA LOS ANGELES
依托单位国家：
美国
项目类别：
财政年份：
2017
资助国家：
美国
起止时间：
2017-09-25 至 2022-07-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/9431079
关键词：
17q21 ATAC-seq Affect Agreement Algorithms Architecture Bioinformatics Biological Assay Biology Brain Characteristics Clinic Clinical Cloud Computing Code Collaborations Collection Complex Data Data Analyses Disease Disease susceptibility Epigenetic Process Foundations Frontotemporal Dementia Frontotemporal Lobar Degenerations Gene Expression Regulation Genetic Genetic Determinism Genetic Transcription Genetic Variation Genome Genomic Segment Genomics Goals Heritability Knowledge Methods Nerve Degeneration Neurons Nucleotides Occipital lobe Parkinson Disease Pathogenicity Pathologic Pathology Patients Phase Phenotype Play Predisposition Privatization Process Progressive Nonfluent Aphasias Progressive Supranuclear Palsy Proteomics Research Infrastructure Resources Risk Factors Role Sampling Severities Site Syndrome Tauopathies Thalamic structure Tissue Sample Untranslated RNA Validation Variant accurate diagnosis base brain tissue disorder risk follow-up genetic risk factor genetic variant genome sequencing high throughput screening member neuron loss novel risk variant tau Proteins transcriptome sequencing transcriptomics whole genome

项目摘要

Progressive supranuclear palsy (PSP) is the most common frontotemporal lobar degeneration associated with tau pathology. While rare pathogenic variants, common risk factors, and – more recently – rare risk-associated variants have been identified in PSP, a significant proportion of the heritability for neurodegenerative tauopathies and other frontotemporal lobar degenerations remains unexplained, strongly suggesting that additional genetic risk factors await discovery. In this application, we propose to identify novel genetic variation associated with PSP using a multi-stage strategy. First, we will detect variants through whole-genome sequencing of neuropathologically characterized PSP. Second, we will prioritize pathological brain tissue samples for a multidimensional screen that includes transcriptional, proteomics, and epigenetic assays. Through recursive application of a prioritization algorithm, regions and variants most likely to have a high impact on disease risk will be identified. Finally, we will follow up on these variants using a high-throughput functional screen. This project taps unprecedented pathologic resources of PSP, leverages a pathologic and genetic infrastructure created with support from private foundations, and offers to transform our understanding of the genetic architecture of PSP and to advance towards the biology and downstream effects of this prototypical tauopathy downstream effects of this prototypical tauopathy.

进行性核上性麻痹（PSP）是与tau病理学相关的最常见的额颞叶变性。虽然在PSP中已经确定了罕见的致病性变体，常见的风险因素以及最近的罕见风险相关变体，但神经退行性tau蛋白病和其他额颞叶变性的遗传性的很大一部分仍然无法解释，强烈表明其他遗传风险因素有待发现。在本申请中，我们提出使用多阶段策略来鉴定与PSP相关的新的遗传变异。首先，我们将通过神经病理学特征的PSP的全基因组测序来检测变体。其次，我们将优先考虑病理性脑组织样本进行多维筛选，包括转录，蛋白质组学和表观遗传分析。通过递归应用优先化算法，将识别最有可能对疾病风险具有高影响的区域和变体。最后，我们将使用高通量功能筛选来跟踪这些变体。该项目利用PSP前所未有的病理资源，利用在私人基金会支持下创建的病理和遗传基础设施，并提供改变我们对PSP遗传结构的理解，并推进这种原型tau蛋白病的生物学和下游效应。