CerealsDB: A community resource for wheat genomics

CerealsDB：小麦基因组学社区资源

• 批准号: BB/L020718/1
• 负责人: Keith Edwards
• 金额: $ 35.38万
• 依托单位: University of Bristol
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2014
• 资助国家: 英国
• 起止时间: 2014 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FL020718%2F1
• 关键词: CerealsDB; community; resource; wheat; genomics

CerealsDB ( http://www.cerealsdb.uk.net/) is one of the most highly accessed wheat web sites with over 5,000 unique accesses per month.The reasons for CerealsDB's success are clear; it provides the community with sequence and single nucleotide polymorphism (SNP)-based information in a form accessible to and understandable by non-experts.While CerealsDB is successful, to remain of value to its users, it needs to develop in conjunction with the community's expectations. In addition, CerealsDB needs to expand its remit to include further interaction with other web sites such as the internationally based Wheat Initiative. This development is new to this application as in our previous work we developed tools specifically for the UK community rather than the global wheat community. However, although our previous work did focus on the UK community, the easy to use style of CerealsDB has already resulted in the web site becoming international recognised, with many of its users being from non-UK organisations.In this further development, CerealsDB will continue work with UK users to develop sequence and SNP-based resources; however, it will also extend its horizons to include interactions with international web-based resources and the exploitation of genomics resources such as the wheat reference sequence. This extension to its remit will result in an expanded audience for CerealsDB and more extensive tools and datasets being made available to the community.

CerealsDB (http://www.cerealsdb.uk.net/) 是访问量最大的小麦网站之一，每月有超过 5,000 次独立访问。CerealsDB 成功的原因很明显；它以非专家可以访问和理解的形式为社区提供基于序列和单核苷酸多态性 (SNP) 的信息。虽然 CerealsDB 很成功，但为了保持对其用户的价值，它需要结合社区的期望进行开发。此外，CerealsDB 需要扩大其职责范围，以包括与其他网站（例如国际小麦倡议）的进一步互动。这一开发对于该应用程序来说是新的，因为在我们之前的工作中，我们专门为英国社区而不是全球小麦社区开发了工具。然而，虽然我们之前的工作确实集中在英国社区，但 CerealsDB 易于使用的风格已经使该网站获得了国际认可，其许多用户来自非英国组织。在进一步的发展中，CerealsDB 将继续与英国用户合作开发基于序列和 SNP 的资源；然而，它也将扩大其视野，包括与国际网络资源的互动以及小麦参考序列等基因组资源的利用。其职责范围的扩展将扩大 CerealsDB 的受众范围，并向社区提供更广泛的工具和数据集。

项目成果

Plant Gametogenesis, Methods in Molecular Biology Series (Accepted manuscript in forthcoming publication)

植物配子发生，分子生物学方法系列（即将出版的已接受手稿）

• 发表时间: 2022
• 作者: Osman K

Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum).

• DOI: 10.1111/pbi.12834
• 发表时间: 2018-04
• 期刊: Plant biotechnology journal
• 影响因子: 13.8
• 作者: Burridge AJ;Wilkinson PA;Winfield MO;Barker GLA;Allen AM;Coghill JA;Waterfall C;Edwards KJ
• 通讯作者: Edwards KJ

Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2.

• DOI: 10.1111/pbi.13573
• 发表时间: 2021-08
• 期刊: Plant biotechnology journal
• 影响因子: 13.8
• 作者: Raffan S;Sparks C;Huttly A;Hyde L;Martignago D;Mead A;Hanley SJ;Wilkinson PA;Barker G;Edwards KJ;Curtis TY;Usher S;Kosik O;Halford NG
• 通讯作者: Halford NG

A step change in the transfer of interspecific variation into wheat from Amblyopyrum muticum.

种间变异转移到小麦中的步骤变化。

• DOI: 10.1111/pbi.12606
• 发表时间: 2017-02
• 期刊: Plant biotechnology journal
• 影响因子: 13.8
• 作者: King J;Grewal S;Yang CY;Hubbart S;Scholefield D;Ashling S;Edwards KJ;Allen AM;Burridge A;Bloor C;Davassi A;da Silva GJ;Chalmers K;King IP
• 通讯作者: King IP