Fundamentals of Bioinformatics sandbox module
生物信息学沙盒模块基础知识
基本信息
- 批准号:10557263
- 负责人:
- 金额:$ 1.44万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2010
- 资助国家:美国
- 起止时间:2010-09-01 至 2023-06-30
- 项目状态:已结题
- 来源:
- 关键词:AddressBioinformaticsBiologicalBiologyBiomedical ResearchCenters of Research ExcellenceCloud ComputingCodeComplexComprehensionComputer SystemsComputer softwareCustomDataData AnalysesData SetDisadvantagedEducational workshopEngineeringEnsureEnvironmentFoundationsGenomeGrantIntentionLeadLearningMaterials TestingNational Institute of General Medical SciencesNew HampshireResourcesScientistSeriesStudentsTechniquesTimeTrainers TrainingTrainingWorkcloud basedcloud platformcomplex datadata sharingeducational atmosphereexperienceflexibilitygenomic platformgrasphigh dimensionalityinterestlaboratory modulemultidimensional dataonline courseopen sourceself testingskillsstrength trainingtoolvirtual
项目摘要
Project Summary
We propose constructing a module focused on training experimental scientists to interface with
high-dimensional biomedical data generated using a variety of genomics platforms. In our
combined experience training scientists to analyze high-dimensional biomedical data we have
identified three major barriers to experimental biologists accessing, interfacing, and analyzing
biomedical data. First and foremost, is an understanding of what the ‘cloud’ is and how to
access various cloud computing systems. Secondly how to customize a cloud environment with
tools appropriate for an analysis of interest, and finally error mitigation when using new software
to access, manipulate, and analyze digitized biomedical data. Many freely available resources
that introduce the cloud environment are not targeted for experimental biologists, and commonly
lack the practice space and time necessary for some students to grasp foundational concepts
before moving onto the next topic.
Our proposed module uses biomedical data as a training set throughout the module and
focuses on overcoming the three common barriers to learning bioinformatics. Each lesson will
build on the previous lesson to provide a complex and well-rounded understanding of how cloud
environments can be leveraged to interact with digitized biomedical data. Each lesson will begin
with a video and example code, which will then be practiced in the virtual ‘sandbox’
environment, and followed by a self-test activity enabling students to determine if they are ready
for the material in the next lesson. This format enables self-paced learning of foundational topics
that specifically address canonical barriers to working with digitized biomedical data.
项目总结
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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WILLIAM R GREEN其他文献
WILLIAM R GREEN的其他文献
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{{ truncateString('WILLIAM R GREEN', 18)}}的其他基金
Center for Molecular, Cellular, and Translational Immunology
分子、细胞和转化免疫学中心
- 批准号:
8459371 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
Center for Molecular, Cellular, and Translational Immunology
分子、细胞和转化免疫学中心
- 批准号:
8256739 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
CENTER FOR MOLECULAR, CELLULAR, AND TRANSLATIONAL IMMUNOLOGY
分子、细胞和翻译免疫学中心
- 批准号:
8364912 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
Center for Molecular, Cellular, and Translational Immunology
分子、细胞和转化免疫学中心
- 批准号:
8847733 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
Center for Molecular, Cellular, and Translational Immunology
分子、细胞和转化免疫学中心
- 批准号:
8116197 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
Center for Molecular, Cellular, and Translational Immunology
分子、细胞和转化免疫学中心
- 批准号:
8655174 - 财政年份:2011
- 资助金额:
$ 1.44万 - 项目类别:
New Hampshire IDeA Network of Biomedical Research Excellence (NH-INBRE)
新罕布什尔州 IDeA 生物医学研究卓越网络 (NH-INBRE)
- 批准号:
9901955 - 财政年份:2010
- 资助金额:
$ 1.44万 - 项目类别:
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